rs47845011 SNP Detail

Summary

• ID
  rs47845011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74270767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC TGTGTGTTGC TGTAACTAGA
  Y
  GGTACTGACT TTTTCACACA GCGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52662189	NES15474953	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C	C	T	T	T		C		T	T	C		T
ss144625214	ENSMUSSNP2714843	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T											C
ss324434593	CHEV_13_74260096	CHEVERUD	SCREENING_POP	f	SNP												C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47845011					SNP	T	T	T	C	T	T	C	C	T	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52662189	NES15474953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74270767 () rs orientation: forward

Symbol	Name	Function Class
0610040A22Rik	RIKEN cDNA 0610040A22 gene	651 bp upstream
Cpgi5859	CpG island 5859	903 bp distal
Gm41003	predicted gene, 41003	within coordinates
Rr281645	regulatory region 281645	within coordinates
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	within coordinates
Tssr120348	transcription start site region 120348	1227 bp downstream
Tssr120349	transcription start site region 120349	1202 bp downstream
Tssr120350	transcription start site region 120350	114 bp downstream