rs47846848 SNP Detail

Summary

• ID
  rs47846848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20579502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGACGG AATCTAGGAA
  GGCAAGGGCA TGACCAAGAG AAGGCTGGGG TGGGGGTCAC AGGCGATGTG GGAAGGCTCC
  CCAAAGCCCT TGCAGGGGCA CCTAGGGGTC CCCGGCAGTG CTGATGACGT GGAACAGGGT
  GACGTTGTAC AGCACCTGGT GCCCGTTGTT CCAGGTATAC AGGGCCCGCT CCCTGGGGTT
  R
  TAATCCAGCA TCGAGATGTG CGAATACTGG TTGTGGAAGG GCACATCCGT GTACTCATAG
  CTGGACGTGT TGGTGAAGTA CGCAAAGTAG ACCTTGGCTC CGGCCAGGTG AGAGTTGGTC
  ACATAGAGGA CACCGCAGAT CATGAAGGCC TCGCCGGCGC TGCGCTTAGG GTACCCGGTG
  TCCCAGGATC TCACGACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61358371	NES16736077	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47846848					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61358371	NES16736077	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20579502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21396	CpG island 21396	within coordinates
Olfm2	olfactomedin 2	within coordinates
Rr674553	regulatory region 674553	1258 bp distal
Rr674554	regulatory region 674554	1294 bp distal
Tssr88321	transcription start site region 88321	287 bp upstream
Tssr88322	transcription start site region 88322	210 bp upstream
Tssr88323	transcription start site region 88323	192 bp upstream
Tssr88324	transcription start site region 88324	110 bp upstream