rs47846913 SNP Detail

Summary

• ID
  rs47846913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153065838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC CATCAGGACC AAATGCACCC
  R
  CTTCATCTTA GGTGTCACAC CTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147988176	ENSMUSSNP305569	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47846913					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153065838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1072 bp proximal
Rr567581	regulatory region 567581	1905 bp distal
Rr567582	regulatory region 567582	1538 bp distal
Rr567583	regulatory region 567583	1513 bp proximal
Tspyl3	TSPY-like 3	within coordinates
Tssr26887	transcription start site region 26887	1115 bp downstream
Tssr26888	transcription start site region 26888	1459 bp downstream
Tssr26889	transcription start site region 26889	1478 bp downstream