rs47847631 SNP Detail

Summary

• ID
  rs47847631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4502262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGGGAG AGGGGTCCAG
  CAGCCCCAGG GGGGCGTAGT GGCAACATCC CTGTGTCGCA AGCTGTGCGT CTCTGCCTTC
  GGGCTTTCCA TGGGCGCTCA CGGCCCCCGG GCGCTGCTGA CATTGAGACC CGGTGTCCGC
  CTCACAGGTG AGGGAGGCTT CCAGCTCTGG AGTAGAGGCT CCTGGGATTA GAAAGGGCGA
  Y
  TCGGCTCCAT CTGATGACCA GGGTAGCGGG ATGGAGATGT CTTCCGGCCC AAGAGAGGAA
  TTTCTGGGGA CACAGGCAAG CAGGAGGCAG AGAGGCCAAG GTGCTGGCTA CCCAGAAGCC
  GTCGAGGGGA AAGAGCTGCG TGGAGCCGGA GGTGTTGAAA CGCTCCGAAC GCCATGAACC
  TTCACCTCTG TCAACAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63636398	NES17047698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47847631					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63636398	NES17047698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4502262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7918	CpG island 7918	within coordinates
Dnaja3	DnaJ heat shock protein family (Hsp40) member A3	within coordinates
Rr370034	regulatory region 370034	539 bp downstream
Tssr136865	transcription start site region 136865	261 bp downstream
Tssr136866	transcription start site region 136866	162 bp downstream