rs47847815 SNP Detail

Summary

• ID
  rs47847815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127294083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCCTGCA ACCCAGATGG
  ACAAATCCTC AGAAATATCA CTAATTATTG ATGCTCTTGG GTCCCAAATT TGATCATCTG
  TAGATCTTAT TGATTTTTAC AGTTCAATCA TATCTGCATT TTCTCTATTC TTCTCATTCA
  CACCACCATC ATGGCTCAAC ATTCTAATAC ACACAGCATA AAACCGGGCT GCATGTTCGC
  R
  CCTGTGCACT GCACAGCTTG AAACAGATCT AGAAAGAGAA ATGTCGTGTC TGGGACACGA
  CAGCCTGCCC TGCCTTTCCC ATCTTCCTTA CTGCATCCCT TCTGTGCACT TTGCTCCTCT
  TGATGGGATT TGTATTCACT TGTTTATCCT TTGAGGCTCA CCTAGGACTT GAAGGCAGAG
  TCCACGAGAG CACGGCCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61079235	NES16586931	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	A	A	A	A		A	A		A
ss135865146	ENSMUSSNP2426671	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss320954704	CHEV_3_127203352	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs47847815					SNP	G	G	A	G	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079235	NES16586931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127294083 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	1084 bp upstream
Cpgi13791	CpG island 13791	1025 bp distal
Gm64355	predicted gene, 64355	1818 bp downstream
Rr584800	regulatory region 584800	943 bp distal
Tssr35576	transcription start site region 35576	1396 bp upstream
Tssr35577	transcription start site region 35577	1363 bp upstream
Tssr35578	transcription start site region 35578	1341 bp upstream
Tssr35579	transcription start site region 35579	1297 bp upstream