rs47848239 SNP Detail

Summary

• ID
  rs47848239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:102978745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCACAAGTT TTGTTAACTT TCTATAATGA GCATGAACAG
  GTTTTAGAAA GAGGAAATGG ATTTCTTTTA AAAGTTCACT AAGCATACCT AAATAATTCA
  R
  GTATTTGTCG AGCAAAGGTT AAAGTCTTCC TTCTGAGACT CTCGATCTTC CTTCACCGGC
  CTCCTCTCCA GTTGAAGAAA ACCAAACCTG CTCCCAACAC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145111183	ENSMUSSNP5294460	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47848239					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:102978745 () rs orientation: forward

Symbol	Name	Function Class
Mast4	microtubule associated serine/threonine kinase family member 4	within coordinates
Rr485259	regulatory region 485259	within coordinates
Tssr123856	transcription start site region 123856	1727 bp downstream