rs47848263 SNP Detail

Summary

• ID
  rs47848263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164290255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGCTTCT TTGGTAAGTT GTATTTTTCT TACCTTTCTT
  TGGAGGCCCA GGACGTTGCT TGGCTTGGAA ACTGGAAGAT AATTTTCTGC TGTTCTGTTT
  Y
  CTAACTGATG AATCCACAAG ACATCTGTGT ATTGAGACAA GCTAAGCTTC TCCATCTCCT
  TCCATCTTAG GGCCTATATG GTGGAGGTGG CCGCAACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337194	NES15839708	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	C	T
ss145979021	ENSMUSSNP1186537	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47848263					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337194	NES15839708	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164290255 () rs orientation: forward

Symbol	Name	Function Class
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Rr422219	regulatory region 422219	802 bp distal
Rr422220	regulatory region 422220	648 bp distal
Rr422221	regulatory region 422221	344 bp distal
Tssr14749	transcription start site region 14749	1837 bp upstream
Tssr14750	transcription start site region 14750	1815 bp upstream