rs47849777 SNP Detail

Summary

• ID
  rs47849777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3284958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGTCAC TACATTTCAG
  ATGGCATAGT CACTGCATCC TAGGTGGAAT GGTTACAACA TCTCAGGTGG CATGGACACT
  GCATCTCATG TAAGAATCAC TCAGGTAGAA TGTTCACTGC ATCAAAGGTG AGATGGTCAC
  TGCATCTCAG GTGGATGGTC ACTGTATCTC AGGTAGGATA ATCACTGTCA ATACATCTCA
  R
  GTGGCATGCT CACTACATCT CATGTGGGAT GGTCACTGCA TCACAGTTGG GATCGTCACT
  GCATCTCAGG TGAGATGGTT ACTGCATCTC AGGTAAGAGT CATTACATCT CCCTTGGGAT
  GGTCACTGCA TCACAGGTGA GATGGTTACT GCATCCGCTC CGGTTGGTGT CAAAGGATAT
  GGATTTGCCT GCGGTGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ
ss52277068	NES15359507	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ
rs47849777					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52277068	NES15359507	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3284958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	within coordinates
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	833 bp upstream
Rr265316	regulatory region 265316	within coordinates
Tssr112476	transcription start site region 112476	531 bp upstream
Tssr112477	transcription start site region 112477	776 bp upstream
Tssr112478	transcription start site region 112478	844 bp upstream
Tssr115578	transcription start site region 115578	332 bp downstream