rs47849906 SNP Detail

Summary

• ID
  rs47849906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96723240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTGACAC ATACACGCGG
  CCCTGCTCAG CCATCGCAGC TTCAAAGCTT TGGGTGGACA AAGCAGTTGC TGCTCTTCTG
  TTTGCAGCAG CTCCTACTGT ACTGGGTCTG CCAGAAATGA GACGCTGTTT CTTCAGTTGA
  CTATCAGACC ATTGAGAGAA TGGAGTCAAA GAAGTAGAAA TGTCCCCAAG AGTCTTCTGC
  Y
  GGGAGAAGGA AAAGTCTGCG GCCTGAGGTG GGGATTTGTC CCTCAGCAAG ATTCTCTAAA
  AACCCGTGAG GTCTCTTGAT GGGATGAGAG CAAAGCCCAG ACAAAGATGG ACAGAACCAC
  ACCCTGATGG GGACTGCTCA GCTGTGCATA TCTTTGGCCT TCTATTTAGA TTATATTTCT
  AAAGGTTTAT TTATTTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60426438	NES15934969	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47849906					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60426438	NES15934969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96723240 () rs orientation: forward

Symbol	Name	Function Class
Cd160	CD160 antigen	Intron
Rr581395	regulatory region 581395	1745 bp distal
Rr581398	regulatory region 581398	1221 bp distal
Tssr34643	transcription start site region 34643	1392 bp upstream