rs47851115 SNP Detail

Summary

• ID
  rs47851115
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72866235 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T AAGAAACAGT TTTTGAGTTA AAAAAAAAAA AATTAGAAGC
  CAGGCAGTGG TGTTGCACGC CTTTGATCCC AGCACTTGGG TGGCAGAGGC AGGCGGATTT
  C
  TGAGTTCGAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGG CTACACAGAG
  ACACCCTGTC TTGAAAAACC AAAAAAAAAA AAAAAACAGA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147955383	ENSMUSSNP7086998	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs47851115					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72866235 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22781	CpG island 22781	780 bp proximal
Cpgi22782	CpG island 22782	1511 bp proximal
Pdzd4	PDZ domain containing 4	within coordinates
Rr8723	regulatory region 8723	within coordinates
Rr10008	regulatory region 10008	1235 bp distal
Rr395204	regulatory region 395204	466 bp downstream
Tssr163577	transcription start site region 163577	1724 bp downstream
Tssr163578	transcription start site region 163578	1776 bp downstream
Tssr163579	transcription start site region 163579	1806 bp downstream
Tssr163580	transcription start site region 163580	1920 bp downstream