rs47851873 SNP Detail

Summary

• ID
  rs47851873
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGA CTTTGACTAG CTAATTTGAA
  S
  CTTTCAGGCC TGTAATCTGC AGAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146046325	ENSMUSSNP6066690	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321047001	CHEV_4_14856925	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47851873					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	59 bp proximal
Gm11837	predicted gene 11837	130 bp upstream
Gm68732	predicted gene, 68732	within coordinates
Rr589248	regulatory region 589248	within coordinates
Rr589249	regulatory region 589249	84 bp proximal
Rr589250	regulatory region 589250	672 bp proximal
Rr589251	regulatory region 589251	909 bp proximal
Tssr36545	transcription start site region 36545	82 bp upstream
Tssr36546	transcription start site region 36546	841 bp upstream
Tssr36547	transcription start site region 36547	931 bp upstream