rs47854841 SNP Detail

Summary

• ID
  rs47854841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAGAAGAGGG CAACTGAGAA TAAGAAGCTC ATATGAGAGG
  GAGCTGTGTG CATGAAGGTG TGGGCACATG TAAGAGGTTC TGGGAGTGTG AAAGACCACC
  Y
  AAACACACAG TATCCCTCCA TACCAGCTGC AGCGGGCGCT CAGCTGTGCC TGGGTGTGCT
  GTTGGCTGCT TGTGCCTAGG AAGGAATGCA GGCTCTCTGT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135874487	ENSMUSSNP7128644	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47854841					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	766 bp distal
Fam241a	family with sequence similarity 241, member A	966 bp upstream
Rr398009	regulatory region 398009	716 bp downstream
Rr584896	regulatory region 584896	1270 bp distal
Rr584897	regulatory region 584897	475 bp distal
Tssr35607	transcription start site region 35607	1776 bp upstream
Tssr35608	transcription start site region 35608	1056 bp upstream
Tssr35609	transcription start site region 35609	1019 bp upstream
Tssr35610	transcription start site region 35610	952 bp upstream