rs47855145 SNP Detail

Summary

• ID
  rs47855145
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24569023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA ACAATACATT GTTGAGGACT
  C
  TGAATTTGGT GTTAGATGGC TGTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351351	ENSMUSSNP6633106	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325330795	CHEV_17_24486994	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47855145					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24569023 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	1974 bp upstream
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	774 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	1114 bp distal
Rr405082	regulatory region 405082	1669 bp upstream
Rr523280	regulatory region 523280	820 bp proximal
Rr523281	regulatory region 523281	970 bp proximal
Rr523282	regulatory region 523282	1170 bp proximal
Rr523283	regulatory region 523283	1855 bp proximal
Tssr143021	transcription start site region 143021	1888 bp upstream
Tssr143022	transcription start site region 143022	1905 bp upstream
Tssr143023	transcription start site region 143023	1968 bp upstream
Tssr143024	transcription start site region 143024	1988 bp upstream
Tssr146725	transcription start site region 146725	1004 bp downstream
Tssr146726	transcription start site region 146726	1023 bp downstream