rs47858071 SNP Detail

Summary

• ID
  rs47858071
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:63405894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACAGCCA AGGCCCCTCT CTTACTGGGG CCCCTTTCCC
  TGTTTCAACC TTGAAGCTGA CACTCTTTAC CATCCCCGGC AAGCCAACCT AAAACTCAAC
  W
  CTCTCCAAAC TCAAGTGAAA GGAGGGATTT CTGCCTGGGT GGTGGTCAGC ACAGGTCTGC
  CAGCCTTGCT TCTACTGACC TAGCCACAGC AGCTCATCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144828417	ENSMUSSNP6244796	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47858071					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63405894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19187	CpG island 19187	631 bp distal
Cpgi19188	CpG island 19188	1102 bp proximal
Otud7a	OTU domain containing 7A	within coordinates