rs47858971 SNP Detail

Summary

• ID
  rs47858971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64083138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAACGAT ATGCCATCTG
  TTCTGCCCTG GCTGCCTCGG CCTTACCAGC TTTGGTGATG TCTAAAGGTC TGATGCTTTG
  ATATGTGACA TTTAGTTTTA ACTTGTACCT AAGTAAATTG CTTTCATGAA TTCTGTTTCT
  CTCTGCCTGC TAAAGTCACT TATGCTTACA TCAACATAGT AGGCTCTTAT CACATTCTTA
  W
  AATGTTCTTG ACTGTCAAAA TGATGAAATT CCACTTAATG GTCCGTGTTT CTGAAACGCA
  TGATATTAGT GGAAATTCTG ATTTGGCGCA AATTGCATGA TGGTTTATTT TGAGGTGTGG
  TGCAAAGTGA GACATCTGCC ACTGAAAGCA GAGACAGTAT CTTTTGAGTT CTGGAACAGT
  GTTTCTGGGG GGAAAGATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61410343	NES16794885	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47858971					SNP	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410343	NES16794885	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64083138 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	1267 bp upstream
Gm22571	predicted gene, 22571	17 bp upstream
Gm23136	predicted gene, 23136	805 bp upstream
Gm23344	predicted gene, 23344	741 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368800	regulatory region 368800	1663 bp downstream
Rr681195	regulatory region 681195	1693 bp distal
Snord16a	small nucleolar RNA, C/D box 16A	334 bp downstream
Tssr85597	transcription start site region 85597	884 bp downstream
Tssr85598	transcription start site region 85598	430 bp downstream
Tssr85599	transcription start site region 85599	243 bp downstream
Tssr85600	transcription start site region 85600	1113 bp upstream
Tssr85601	transcription start site region 85601	1518 bp upstream
Tssr85602	transcription start site region 85602	1585 bp upstream
Tssr85603	transcription start site region 85603	1856 bp upstream
Tssr85604	transcription start site region 85604	1896 bp upstream
Tssr90132	transcription start site region 90132	1932 bp downstream