rs47859173 SNP Detail

Summary

• ID
  rs47859173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACCCGCC CCCGCGGGGA GCTGGGTGGT GTGGTTCAGG
  CGTCCTGGGA CGGGGACCAG GCACATCGGA CAGAGCTGGG TGGAGCTCCC ACCCGAACGA
  Y
  GTCCTGGGCG ACCCTCGCCT TTCCCATCAG CAGGACTTGT CGGCTTCTTT TCCAAGAGAG
  AAACTGAAGT TCAGAGAAGC CAGGGGCCAA ATAAGAACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145361153	ENSMUSSNP2553173	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47859173					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468091 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	279 bp upstream
Cpgi20655	CpG island 20655	within coordinates
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1324 bp downstream
Rr666301	regulatory region 666301	202 bp distal
Rr666302	regulatory region 666302	93 bp distal
Rr666303	regulatory region 666303	within coordinates
Rr666304	regulatory region 666304	754 bp proximal
Tssr2618	transcription start site region 2618	1349 bp upstream
Tssr2619	transcription start site region 2619	1061 bp downstream
Tssr2620	transcription start site region 2620	165 bp downstream
Tssr2621	transcription start site region 2621	1093 bp upstream
Tssr78291	transcription start site region 78291	1106 bp downstream
Tssr78292	transcription start site region 78292	1084 bp downstream
Tssr78293	transcription start site region 78293	943 bp downstream
Tssr78294	transcription start site region 78294	888 bp downstream
Tssr78295	transcription start site region 78295	842 bp downstream
Tssr78296	transcription start site region 78296	823 bp downstream
Tssr78297	transcription start site region 78297	28 bp downstream
Tssr82049	transcription start site region 82049	1392 bp upstream
Tssr82050	transcription start site region 82050	1304 bp upstream
Tssr82051	transcription start site region 82051	1030 bp upstream
Tssr82052	transcription start site region 82052	272 bp upstream