rs47859285 SNP Detail

Summary

• ID
  rs47859285
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73549795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CACTCTGAGC ATGTTTCTGT TGTTGCATCT CCACTTGCAT
  ACAAATTGAT ACAATTGTCA TTTAGTCATT GTTCCATTGC AAACATTCCA GATCTTTCCG
  W
  GGCTACTTCT GCTTTGACTT CTCACCTGTG TTTTTATGGC ATCTCTTTGT CCTTGCCGTT
  CCTTGGGGTC TCTTCCACCA TCTAGAGATT TTTCTCATCA C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144676738	ENSMUSSNP639094	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47859285					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73549795 () rs orientation: forward

Symbol	Name	Function Class
Gm9553	predicted gene 9553	1410 bp upstream
Rr371511	regulatory region 371511	600 bp upstream