rs47859511 SNP Detail

Summary

• ID
  rs47859511
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146998760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA TTTCTTCTGA GTTATACAAA
  C
  GAATGAAATT CATTTTGTGC TTGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144663665	ENSMUSSNP1679158	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47859511					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146998760 () rs orientation: forward

Symbol	Name	Function Class
Lnx2	ligand of numb-protein X 2	within coordinates
Rr399514	regulatory region 399514	1350 bp upstream
Rr624841	regulatory region 624841	1557 bp distal
Rr624842	regulatory region 624842	1253 bp proximal
Tssr54497	transcription start site region 54497	1344 bp downstream