rs47860708 SNP Detail

Summary

• ID
  rs47860708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45014830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATAACCT CGTGAACCTT
  GATCCCAAAA CACACCTGGA GGAAAGGATG GCTGTTTGGT ACTTGGAGTA TGAGACATCA
  GATATTACCA TATGGGTCTC TAGAGGCAAT GAGATGCCAG AAATATCCAG CTTTGGGGGA
  GAGGAGACTC TGCAAGTCTA GCACCTGAGA TGATAGAGCA GATGATAAGT GCTCGTTAAA
  R
  CCATGGGAGA TGTGAAGTTG AGGCCACCAA GACATGAAGA TGGGAGTGGA ATGCAGAGCC
  AAGGTCCAGA CTTTTGAATC TACCTAGGGG TGAAGAAACT TAGAGCCTGA CTGTTTGGTG
  GGAGTGTAAG CCTGGGTGGG TGGTCTGATG GACAGGACAC TCACCACTGT CAGAGATTCT
  GGGTCCCTGA GATGAGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61003692	NES16117371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47860708					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003692	NES16117371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45014830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	637 bp proximal
Mtag2	metastasis associated gene 2	755 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	1537 bp upstream
Rr646419	regulatory region 646419	290 bp proximal
Rr646420	regulatory region 646420	612 bp proximal
Rr646421	regulatory region 646421	1298 bp proximal
Tssr72376	transcription start site region 72376	1362 bp downstream