rs47861334 SNP Detail

Summary

• ID
  rs47861334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45655467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAGACAC GGCTAGGCAT
  TAGAACATGA GCAGAGTATG AGTAGTCATT TGAGTTCTGG CTCCGAAATG CACTGGATAG
  CAAGCTGTCC CAGGACAGTC AATAGATGCT AATGTTGGAA TTTGAACTGA GAGACCTCAA
  GAATTGCAGT GAAGTGCGCC GTATATGTTC CCTGTTCAAT TTCAATGAGA AGTTATTGGA
  R
  TGTCTTATTC ATGAGCCAGC TAAGACTCAC AGACTCTAAG AAACTGGAGT AACACAGATG
  TCCTGTGACA CGGGCTATGT CAGAGGAGCT GTACAGCAGG GGACAAGGCT GTCCTTGATT
  TAGCTCTTAC CTGCCCAGTT CCTGTTTGAC CTGCGTGAGT TTTGTGAGCC TTCATTGTCT
  TGTCTGTATA TATGAAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52634648	NES15450823	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47861334					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52634648	NES15450823	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45655467 () rs orientation: forward

Symbol	Name	Function Class
Rr283739	regulatory region 283739	1467 bp distal
Rr283740	regulatory region 283740	within coordinates