rs47861536 SNP Detail

Summary

• ID
  rs47861536
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCAGGACA CCCCAGTGTA TCCTCAAGGC CGCCTTTGCT
  TGGATCCATG AAGAAATTCC CAACTGCTGT GGCTGAAGTC TAAGGTCTGC TCATGTCTAG
  T
  CCCTGAGCTG TCTATCAGCC TGACCATGGC TTCAGTAGGA GGGCTCTGCT GTGTGTGACA
  GTTAGAACAC TAATATGTCT CCAAATTCTG GCTCCCCAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145548313	ENSMUSSNP3513878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47861536					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777321 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1721 bp distal
Rr12645	regulatory region 12645	1080 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1843 bp downstream
Tssr226	transcription start site region 226	1573 bp upstream
Tssr227	transcription start site region 227	138 bp upstream
Tssr9015	transcription start site region 9015	1847 bp downstream
Tssr9016	transcription start site region 9016	1595 bp downstream
Tssr9017	transcription start site region 9017	1557 bp downstream
Tssr9018	transcription start site region 9018	1539 bp downstream
Tssr9019	transcription start site region 9019	1506 bp downstream
Tssr9020	transcription start site region 9020	735 bp downstream
Tssr9021	transcription start site region 9021	715 bp downstream
Tssr9022	transcription start site region 9022	227 bp downstream
Tssr9023	transcription start site region 9023	153 bp downstream
Tssr9024	transcription start site region 9024	117 bp downstream
Tssr9025	transcription start site region 9025	162 bp upstream
Tssr9026	transcription start site region 9026	364 bp upstream
Tssr9027	transcription start site region 9027	474 bp upstream
Tssr9028	transcription start site region 9028	514 bp upstream
Tssr9029	transcription start site region 9029	1094 bp upstream
Tssr9030	transcription start site region 9030	1129 bp upstream
Tssr9031	transcription start site region 9031	1188 bp upstream
Tssr9032	transcription start site region 9032	1771 bp upstream
Tssr13890	transcription start site region 13890	1808 bp upstream
Tssr13891	transcription start site region 13891	1563 bp upstream
Tssr13892	transcription start site region 13892	1496 bp upstream
Tssr13893	transcription start site region 13893	1479 bp upstream
Tssr13894	transcription start site region 13894	730 bp upstream
Tssr13895	transcription start site region 13895	686 bp upstream
Tssr13896	transcription start site region 13896	159 bp upstream
Tssr13897	transcription start site region 13897	131 bp upstream
Tssr13898	transcription start site region 13898	1154 bp downstream
Tssr13899	transcription start site region 13899	1222 bp downstream
Tssr13900	transcription start site region 13900	1232 bp downstream
Tssr13901	transcription start site region 13901	1793 bp downstream