rs47862655 SNP Detail

Summary

• ID
  rs47862655
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156076446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA AAGGACATAG CCACCGCCCA
  R
  CGCGTAGGGC AGGTAGTAGT CGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148124199	ENSMUSSNP7217098	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321444384	CHEV_4_155366098	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47862655					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156076446 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	228 bp upstream
Rr606628	regulatory region 606628	1460 bp distal
Rr606629	regulatory region 606629	627 bp distal
Rr606630	regulatory region 606630	585 bp proximal
Rr606631	regulatory region 606631	650 bp proximal
Rr606632	regulatory region 606632	661 bp proximal
Rr606633	regulatory region 606633	903 bp proximal
Rr606634	regulatory region 606634	1264 bp proximal
Rr606635	regulatory region 606635	1399 bp proximal
Sdf4	stromal cell derived factor 4	883 bp upstream
Tssr1404	transcription start site region 1404	950 bp upstream
Tssr40748	transcription start site region 40748	411 bp upstream
Tssr40749	transcription start site region 40749	1154 bp upstream
Tssr40750	transcription start site region 40750	1241 bp upstream
Tssr40751	transcription start site region 40751	1316 bp upstream
Tssr40752	transcription start site region 40752	1459 bp upstream
Tssr44987	transcription start site region 44987	342 bp downstream
Tssr44988	transcription start site region 44988	615 bp downstream