rs47862724 SNP Detail

Summary

• ID
  rs47862724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:99307886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA TGAGAGACGC CTACACAACC
  R
  CAACAAAAAT AGAGATGCTA TTACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132709408	ENSMUSSNP2221425	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47862724					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99307886 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	183 bp upstream
Cpgi3798	CpG island 3798	857 bp proximal
Krt12	keratin 12	Intron
Tssr104877	transcription start site region 104877	81 bp upstream
Tssr104878	transcription start site region 104878	162 bp upstream
Tssr104879	transcription start site region 104879	215 bp upstream
Tssr110665	transcription start site region 110665	73 bp upstream
Tssr110666	transcription start site region 110666	1330 bp downstream
Tssr110667	transcription start site region 110667	1368 bp downstream