rs47862882 SNP Detail

Summary

• ID
  rs47862882
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTCCAG GATTACCTGT
  GATGAAGCAA TAGACCTATG TAACTTGTGA GTTGTGAGTT ATCAGGGCAA GGGTTACAGA
  GATAGGTGCA TGGAAGCAAT ATGGAAGATT TGCAGGCTAC CCGCCCTTCT GGGGTTTGGT
  TGGGTTTCTG TTCATCGGTT TGCTTTTTTT CTGTTAGAAT TACAGAAGTC CCTTCTCCTT
  M
  CATGCAGACA TACAGAAGTG ACTGCCACTT CATGGTTTTG TAGTATTTCA TCAATTATCC
  TCAGTGTGTG AAACTAGAAC ATAATAGGAA CCTGCATTGA TGACAGAAGC TGTACATTTC
  AGTGAGTGGC CAGTCAAAGC ACCCAGAATA AAGAGGTCTA CACTTTCTCC TGCACTATCA
  CTGACTGTTT CCTCTTGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393398	NES17236662	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47862882					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393398	NES17236662	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414636 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	440 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	742 bp upstream
Traj41	T cell receptor alpha joining 41	854 bp downstream
Traj42	T cell receptor alpha joining 42	1343 bp downstream
Tssr125566	transcription start site region 125566	1197 bp downstream
Tssr125567	transcription start site region 125567	960 bp downstream
Tssr125568	transcription start site region 125568	943 bp downstream
Tssr125569	transcription start site region 125569	923 bp downstream
Tssr125570	transcription start site region 125570	894 bp downstream
Tssr128543	transcription start site region 128543	517 bp upstream