rs47863721 SNP Detail

Summary

• ID
  rs47863721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55517044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTTAGA TATAGATACA
  GACATAGTAT AGATCCAGAT TGAGTTTCCT GTAACTAAGT CTGACCTCAA ACTGTTATTC
  CTGCCTCTGC CTCACAAGGG CTGGCATTAC ATACATGTGC TACCCTGCCC AGATTCGAGT
  GTGTATGCCT GAAGATTCAG GTGCCCTCGT GACACAGCAT GCCCACATGC ATGGTCACAC
  M
  GGTGATGTGA TTACCTCTTT GCTCACCTGG CTATCAGATG ACAGCCTAGG GGCAGCAGTC
  TCCGCATGCA AACTGCCTGA GCTAGGGTTG CTAAGCATGC ATAAGCCTGG GACATAGAAG
  GTAAATGAGT AGTGAACAAT GCACTTTTGT GGATGCCTAG GACTCGGAAC ACATGCCCCA
  TGTCCATGGA ACCCCCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806369	NES17743864	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47863721					SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806369	NES17743864	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55517044 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	501 bp upstream
Rr369713	regulatory region 369713	254 bp upstream
Rr480442	regulatory region 480442	1192 bp distal
Rr480443	regulatory region 480443	626 bp distal
Rr480444	regulatory region 480444	406 bp distal
Rr480445	regulatory region 480445	20 bp proximal
Rr480446	regulatory region 480446	512 bp proximal
Tssr119942	transcription start site region 119942	505 bp upstream
Tssr119943	transcription start site region 119943	536 bp upstream
Tssr119944	transcription start site region 119944	550 bp upstream