rs47863771 SNP Detail

Summary

• ID
  rs47863771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGAAAA CAGAAAGCAA
  GTTGATCACA AATTTTAGTT GTGAAATTAA AATTTCAGAA GTGAACAAAT TAAGCCTGAT
  TAAAGACATT TAGCACACTG ATAAATACCC AGGATTTCCT TTTCAAACAT GAAGTCAAAA
  TAGAAGTTTC GTCAGCAAAG AGCACTTTTC CATTGTTGAA ACATCTTCCT CTCAAACTCC
  R
  AGTTGAATGA TGTGTTTGAT ATTGAGGCAT ACTTCAGCCT GGAAAAGCTC CGAAGGTCCT
  TTTACATTGT CAGTGGTGAC AATAGTAGTG AATCTGATGG CAGTGAGCAG CAGTGGCCTG
  AAGAGCTCTG GTATTTAATT ACAACTTGCT TGCTCACGCT CTTTGTAGAT TTCACCAAAT
  TTCTTCTAAG TGCTGCTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135841028	ENSMUSSNP102949	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320948047	CHEV_3_126481681	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47863771					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1599 bp upstream
Tssr31580	transcription start site region 31580			1634 bp upstream
Tssr31581	transcription start site region 31581			1645 bp upstream