rs47863777 SNP Detail

Summary

• ID
  rs47863777
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT GTCAGCAGGA GCCCTGGACC
  C
  CTCCCCTGGA GGCCCATAAG AAGTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145142257	ENSMUSSNP6874657	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322281152	CHEV_7_87486289	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47863777					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	905 bp distal
Cpgi19332	CpG island 19332	1480 bp proximal
Hddc3	HD domain containing 3	1701 bp upstream
Rr400403	regulatory region 400403	1002 bp downstream
Rr400404	regulatory region 400404	1540 bp upstream
Rr649870	regulatory region 649870	694 bp distal
Rr649871	regulatory region 649871	1035 bp distal
Rr649872	regulatory region 649872	366 bp distal
Rr649873	regulatory region 649873	1220 bp proximal
Rr649874	regulatory region 649874	1664 bp proximal
Tssr67435	transcription start site region 67435	1688 bp upstream
Tssr67436	transcription start site region 67436	1762 bp upstream
Tssr73215	transcription start site region 73215	1393 bp upstream
Tssr73216	transcription start site region 73216	1253 bp upstream
Tssr73217	transcription start site region 73217	1193 bp upstream
Tssr73218	transcription start site region 73218	1172 bp upstream
Unc45a	unc-45 myosin chaperone A	403 bp upstream