rs47864421 SNP Detail

Summary

• ID
  rs47864421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96077877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCGAGC TGTTAGTAGG
  CCAGGCAATG GGTATGCTTT ATTTTCCTTC AGCCGGTGAG TGGGTTCAAA CCAGCCATAA
  GGTCCTTTGC CAGGTCTCCT GATTCTGAGA GGTGAGAGGG GTCGGAGGCA TCCAGAGAGT
  CAACTCTAGG AAAGACCACC CTCAGGGAAG GTAAACACCA TTTCTCTAGT CTGTGGGGAG
  R
  TGATAAAGTG TGCTGCCTTC TGCCCTGGTT CTCAAGTGGC ATACCAATTC CCCCAGTTAA
  GGACACTAGG GCTGACCTGG GGTTGGACGA AGTTGCCGTG GCCCTTCGAT CACCTTAGCG
  TCCACGCCGG AGTAAAAATT AAAATCCAGC CCCAGCTTCC CCAGAAGGTT TGCCCTTCCA
  CCCGGAGTTC CGATGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60651692	NES16269106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47864421					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651692	NES16269106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96077877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	358 bp proximal
Mmp15	matrix metallopeptidase 15	1047 bp upstream
Rr668225	regulatory region 668225	1653 bp distal
Rr668226	regulatory region 668226	529 bp proximal
Rr668227	regulatory region 668227	1030 bp proximal
Tssr78982	transcription start site region 78982	987 bp upstream
Tssr78983	transcription start site region 78983	1009 bp upstream