rs47864636 SNP Detail

Summary

• ID
  rs47864636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92244713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTTTTGGCT ATCCTGAGTT TTTTGTTTTT CCATATAAAG
  TTGGGAATTG TTCTTTCCAT GCCTGTGAAG AATTATGTTG TAATTTTGAT AGGGGTAGCA
  Y
  TGAATCTGCA GATTGCTTTT GGCAAAATGG CAATTTGTAC TATGTTAATC CTACCAATCC
  ATGAGTGTGG AAGGTCTTTC CATCTTCTGA GGTCTTCTTA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136818610	ENSMUSSNP5424875	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47864636					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92244713 () rs orientation: forward

Symbol	Name	Function Class
Rr580475	regulatory region 580475	748 bp distal
Sprr2d	small proline-rich protein 2D	1734 bp upstream
Tssr30282	transcription start site region 30282	1668 bp upstream
Tssr30283	transcription start site region 30283	1726 bp upstream