rs47864917 SNP Detail

Summary

• ID
  rs47864917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81341685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCATAGC AGAGGTCACC
  AGAGTTGAAT GTGAGTGACA TTTGACCTGG CATCAAGCAT GGATTGTTGA AGGGGCTGAG
  ACAAAAGTCT CCCCCAGAAT CTTATCTGCC CAGCATTGTA GATCATTGCC TGATTCCCAG
  TGGGTGTTTC ATGCTCACCA GTTTTGGATC TCAGGTCTCC TAAGTTGGCA GGAAACTCAG
  K
  TCTGTTGGTT TAGGGCCCTG GGCACTGTCC TCTGCCCCAG CAGCCACAAG ATGTGAGAGA
  GCTTGGCTCC AAGATGGCCG GTGCTGCCTC CTCCTGCCCT CCACAGTTAG GTAGAGCAGC
  TTCCCCCAGT GCTAAACCTG CCTCGGTCAA CCGACTGTGA TGGATGTGAC CCAAACTTCC
  CTGAGACTTG ATCATGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292367	NES16908591	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47864917					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292367	NES16908591	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81341685 () rs orientation: forward

Symbol	Name	Function Class
Gm16106	predicted gene 16106	1085 bp downstream
Gm56270	predicted gene, 56270	1133 bp downstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr223625	regulatory region 223625	580 bp distal
Rr223626	regulatory region 223626	1991 bp proximal