rs47864961 SNP Detail

Summary

• ID
  rs47864961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77921976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGACAT TCACCTGCTC
  TTTACCAGGA CAGATCCAGA TTGCAGCTAA CAATATCTTC ACCTCGCTTG TCACTCCCAA
  GTGAGTTACA CAAACACTGT CAAGACAGAC AGTCCTTTCC AAATGACAGC AGAAATCAGG
  ATGTCTGCTC TCCAGTTCAA GAGTTCAGTG GACCCATTAC TTTAAAGGGA GCTTGCTTAA
  R
  TTTCCTGAGA GGATCTTTCT AAAATAGCTC TTTCTCTCTC CCAGCTGACT TGCAGACCTA
  ACTCTGTCAG ATTCAGGTCT GCATGACAAG CTAGCTATGC AGGGGTGAGA TGAAGGGTGG
  TAGGAGGTGG TGGTTTGAGC AACCTCAGCA GGCTATTTCC CTCCCCGACC CCCTTTTTCA
  ATAGGGTGTA GCTCTGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61428472	NES16804919	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47864961					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428472	NES16804919	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77921976 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	596 bp upstream
Gm39375	predicted gene, 39375	324 bp upstream
Gm69108	predicted gene, 69108	771 bp upstream
Rr683457	regulatory region 683457	637 bp distal