rs47865652 SNP Detail

Summary

• ID
  rs47865652
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153536918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAATGTC AGTCAGCTAC
  CCATCAGACA AGTGAGACAG TTACTGTGAC AGATGCCTGG GATGGAGCAA CTTAAAAAGC
  CGAGCTGTTC CTGCTCTTGC AGGTGTGGCT GCTGTGTCAC ATGGATGTCA GTAGGTGGCA
  GAGGGGAGAG AGGCTATGTC TATGCTGAGT GTTCTGACCT TCAGACATCT GAAGGATTAG
  T
  AGCCTAACAT TTCCTGAAAA AAAGTGAGCC TGAGACCACC ACCAGTCTGT CACCACAGGG
  CCTGGACAGG GAACTAGGTT GAGATGACTA CCAAGACAGT GCCAGGTAGG CCTGGACAGG
  CTCCCAGGAC AGGAAGCAAG CCAAAGGCGG GAAGAAGCCA ACCTGGGACA GCAGGCCCCA
  GGCAGGAGTG AGCCCAAGAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136113964	ENSMUSSNP2249497	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47865652					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153536918 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	Noncoding-Transcript-Variant
Rr587767	regulatory region 587767	671 bp distal
Rr587768	regulatory region 587768	528 bp distal
Rr587769	regulatory region 587769	337 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	56 bp distal
Rr587772	regulatory region 587772	529 bp proximal