rs47865875 SNP Detail

Summary

• ID
  rs47865875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164266353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAA AGGGGGCTCT GCAAATGGAG
  R
  CACTGAGGCA GAGACCAAGT AAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60337249	NES15839909	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	G	A		G	G	A	G		G
ss320086025	CHEV_1_166368915	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47865875					SNP	A	A	A	A	A	A	G	G	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337249	NES15839909	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164266353 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	1483 bp downstream
Tssr9784	transcription start site region 9784	277 bp downstream
Tssr14731	transcription start site region 14731	1359 bp upstream
Tssr14732	transcription start site region 14732	1024 bp upstream
Tssr14733	transcription start site region 14733	925 bp upstream
Tssr14734	transcription start site region 14734	880 bp upstream
Tssr14735	transcription start site region 14735	826 bp upstream
Tssr14736	transcription start site region 14736	785 bp upstream
Tssr14737	transcription start site region 14737	725 bp upstream
Tssr14738	transcription start site region 14738	589 bp upstream
Tssr14739	transcription start site region 14739	405 bp upstream
Tssr14740	transcription start site region 14740	364 bp upstream
Tssr14741	transcription start site region 14741	287 bp upstream
Tssr14742	transcription start site region 14742	245 bp upstream