rs47866418 SNP Detail

Summary

• ID
  rs47866418
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCCTGGTCTA CAAAGTGAGT TCCAGGACAG CCAGGGCTAC
  ACAGAGAAAC CCTGTCTTGA AAAAACAAAA CAAAACAACA ACAAACAACA ACAACAACAA
  M
  AAAGATTTAG AAAGGCAGCT TGAATTTGAT GATCACATTT TGATGCTATG TCATTTAGCA
  GCTTTTTAAT GCTTGAGATG AGGTTGAAGA ACCAAGAAAG G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132548844	ENSMUSSNP5744351	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47866418					SNP	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862797 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	686 bp upstream
Coil	coilin	1964 bp upstream
Cpgi3523	CpG island 3523	1775 bp proximal
Gm10367	predicted gene 10367	405 bp downstream
Rr237596	regulatory region 237596	397 bp distal
Rr247482	regulatory region 247482	1403 bp proximal
Rr402857	regulatory region 402857	1623 bp downstream
Tssr104058	transcription start site region 104058	1708 bp downstream
Tssr104059	transcription start site region 104059	1948 bp upstream
Tssr104060	transcription start site region 104060	1957 bp upstream