rs47866807 SNP Detail

Summary

• ID
  rs47866807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGTAAG TGGTATTGAC
  GGGTGACAGG GTAGACACGT CCACATAGAA AAACTGGATC TCAGACTCAT TCTTGGTGGG
  GGGCTGACAC AGAGTTCGTT CCACTTTTTG GTAGAGGTAC TTCCGCTGAT ATCTATGGTC
  CAAGACAGAG AAGAGTGTGA CTAGTCCCAG CCAGCCTGAG TTCTTCCTAT CAGGTCCCCA
  Y
  ATTTCCCATT CCCTGGGCTG ACAAAGTTAC CCTCCTGCCA CTGGGCTCAG GGAGAAGGGA
  GAAAAACAAA AAGGTTCCCC GGGTGAGGGT CCCTGAAAAC CTGGCAAGGA TGCCCCTCCC
  TACATCCCCA GGTCTTACTC ACAGTCCTCG AAGGATTAGG GGCACCTGGA AGGACACAAC
  AGCCTCCTTC TGGCGGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420891	ENSMUSSNP144688	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47866807					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864280 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1119 bp upstream
Cpgi21698	CpG island 21698	1451 bp proximal
Gm68914	predicted gene, 68914	1730 bp downstream
Rr678012	regulatory region 678012	629 bp proximal
Rr678013	regulatory region 678013	1985 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	98 bp upstream
Tssr89293	transcription start site region 89293	691 bp downstream
Tssr89294	transcription start site region 89294	1984 bp downstream