rs47866990 SNP Detail

Summary

• ID
  rs47866990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATAA AATCTTTTTA
  AAAAACCTAA TACTATCAGA TAATATTTCT TTAGCCTGTA CTGGCTTAAG GAGGTCCTTC
  CCTCCGAAAA AGTTTTGTAT AGGAAATCTG GTTTTCTGTC ACTAGAATTT GTACTTTAAC
  AGAGTTGTGT AGTTTCTGTG GCAGTAAGTG CAAATTGATA GGTGAAAAAT TGTAAAACAA
  Y
  TTAGTGTCTT CAGAGCAGAG GGTATCATCT TTGGTAGGCA GGAAGGGTTA GAACAGTGGG
  CTTCCACGGT GGTGTTTCCT TATTTCTGGG TCCCCCACTC TACTCTAGAC TTTGACCAGA
  ATCCAGATAC TGGGACATGG GCATCCATCC TAAAGCTGGG TAGGTCACTT GGTTTGTAAG
  GCAGGATGAG ACCCCCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135184761	ENSMUSSNP3075270	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47866990					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1265 bp distal
Gm65558	predicted gene, 65558	1791 bp upstream
Rr397672	regulatory region 397672	1590 bp downstream
Rr576829	regulatory region 576829	1830 bp distal
Rr576830	regulatory region 576830	1337 bp distal
Rr576831	regulatory region 576831	877 bp distal
Rr576832	regulatory region 576832	306 bp distal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1652 bp downstream
Tssr29132	transcription start site region 29132	1616 bp downstream
Tssr29133	transcription start site region 29133	1584 bp downstream
Tssr29134	transcription start site region 29134	1560 bp downstream
Tssr29135	transcription start site region 29135	1397 bp downstream
Tssr29136	transcription start site region 29136	1373 bp downstream
Tssr29137	transcription start site region 29137	1351 bp downstream