rs47868569 SNP Detail

Summary

• ID
  rs47868569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88482428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAATTGC CCACAGCTAA
  GCTGTGTGAC ACTCCCGTCC CAGAGCAGAA CATCTTAGCA GGAGACAGAC TCAGCCTTGT
  AGACTCAAGT TTCCCAGCAA ACGGCAGGTA TGTCCAAACC CTGAGGTCTC CACTCTGCCC
  CGCCCCCAGT CTTTCCAGGA GCCTCTCACA CACTTCCTTG CTGCTGGTTT CATGAAGTTG
  R
  CACCCCTGAC AGTCTACACT GAGAAGCTAA CTGGGTCCCA GCATGGAACC TAAGCCACCA
  GGCCCGCACT ATAGAGTGTG CGCTTCCCAG GGGAGTTGCA TTATACTCCT ATAGTGTTGG
  CGATGCACCC CTGAAAGCAA GCATTTGAGA TGCCGCCCCA CCACCAGCAA GATGGCAGCC
  AATGCCATGC TCAAACTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63579283	NES17028537	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47868569					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579283	NES17028537	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88482428 () rs orientation: forward

Symbol	Name	Function Class
Gm62180	predicted gene, 62180	within coordinates
Tssr135809	transcription start site region 135809	1981 bp downstream