rs47868902 SNP Detail

Summary

• ID
  rs47868902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57532574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGGCAG GAGTTAAGAA
  CACAGACCTG GGTAACTCAG CCTAGGTTCA AATCCCTACT GTGCCACTTA GAAGCTCTGT
  GTTCTCAGGT AAATAGCTCA ACCTCTCTGT GCATTTCCTT TTATGTTTAG GACATAATTA
  ATGCAGCAAA AGCCTGGGTG TTTAAACGAT GAGGGCTATG ATGTGTGTGA GTTTGGAGCA
  S
  AGGGTGCAAG GAGGAGGAAG GCTGGGAGGG AACTAGGCAG GGTGAGCAGG ACCTTGTGCC
  TGGCAAGGAA GACTTTGACT CTACAGAAGT GGGAGCCACA GAGGGTTGTA GGGAGAGAAA
  GGAGGGAACT CCACTAGGGT TTTAACAGGG GCCCTCTACT GGGCAAAGTG GACTGAGTTA
  CCAGTAATTC TTCCCAAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812181	NES17355659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47868902					SNP	C	C	C	C	G	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812181	NES17355659	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57532574 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	759 bp distal
D17Mit20	DNA segment, Chr 17, Massachusetts Institute of Technology 20	1873 bp proximal
Tssr145382	transcription start site region 145382	1711 bp downstream
Tssr145383	transcription start site region 145383	1634 bp downstream
Tssr145384	transcription start site region 145384	1464 bp downstream
Tssr145385	transcription start site region 145385	292 bp downstream
Tssr145386	transcription start site region 145386	451 bp upstream
Tssr145387	transcription start site region 145387	682 bp upstream
Tssr145388	transcription start site region 145388	1264 bp upstream
Tssr148950	transcription start site region 148950	1681 bp upstream
Tssr148951	transcription start site region 148951	1652 bp upstream
Tssr148952	transcription start site region 148952	1592 bp upstream
Tssr148953	transcription start site region 148953	1411 bp upstream
Tssr148954	transcription start site region 148954	1386 bp upstream
Tssr148955	transcription start site region 148955	1241 bp upstream
Tssr148956	transcription start site region 148956	1208 bp upstream
Tssr148957	transcription start site region 148957	622 bp upstream
Tssr148958	transcription start site region 148958	459 bp upstream
Tssr148959	transcription start site region 148959	253 bp upstream
Tssr148960	transcription start site region 148960	443 bp downstream
Tssr148961	transcription start site region 148961	480 bp downstream
Tssr148962	transcription start site region 148962	626 bp downstream
Tssr148963	transcription start site region 148963	678 bp downstream
Tssr148964	transcription start site region 148964	711 bp downstream
Tssr148965	transcription start site region 148965	1222 bp downstream
Tssr148966	transcription start site region 148966	1239 bp downstream