rs47869143 SNP Detail

Summary

• ID
  rs47869143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45201937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACGG GTCTGCTGAG TGAAGGTTAC
  Y
  TTTCCAACAG CACCAATGAA CTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148077394	ENSMUSSNP6633951	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325166147	CHEV_16_45381687	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47869143					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45201937 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	561 bp downstream
Tssr4884	transcription start site region 4884	1116 bp downstream
Tssr4885	transcription start site region 4885	1153 bp downstream
Tssr4886	transcription start site region 4886	1485 bp downstream
Tssr141220	transcription start site region 141220	1025 bp downstream
Tssr141221	transcription start site region 141221	1048 bp downstream
Tssr141222	transcription start site region 141222	1169 bp downstream
Tssr141223	transcription start site region 141223	1182 bp downstream
Tssr141224	transcription start site region 141224	1201 bp downstream
Tssr141225	transcription start site region 141225	1225 bp downstream
Tssr141226	transcription start site region 141226	1277 bp downstream
Tssr141227	transcription start site region 141227	1331 bp downstream
Tssr141228	transcription start site region 141228	1373 bp downstream
Tssr141229	transcription start site region 141229	1389 bp downstream
Tssr141230	transcription start site region 141230	1542 bp downstream
Tssr141231	transcription start site region 141231	1636 bp downstream
Tssr141232	transcription start site region 141232	1688 bp downstream