rs47869896 SNP Detail

Summary

• ID
  rs47869896
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90916888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA GGCACAGAGT AATATACAGA
  K
  CGCCGAAGAA GGGCAAGAAT CATTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147290199	ENSMUSSNP7118383	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss323387263	CHEV_10_90543771	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47869896					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90916888 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	1157 bp proximal
Ikbip	IKBKB interacting protein	1914 bp upstream
Rr402144	regulatory region 402144	1828 bp upstream
Rr436975	regulatory region 436975	1241 bp distal
Rr436976	regulatory region 436976	709 bp proximal
Rr436977	regulatory region 436977	1393 bp proximal
Tssr95222	transcription start site region 95222	1065 bp upstream
Tssr95223	transcription start site region 95223	1998 bp upstream
Tssr98900	transcription start site region 98900	1530 bp downstream
Tssr98901	transcription start site region 98901	1627 bp downstream
Tssr98902	transcription start site region 98902	1657 bp downstream
Tssr98903	transcription start site region 98903	1678 bp downstream
Tssr98904	transcription start site region 98904	1757 bp downstream