rs47870427 SNP Detail

Summary

• ID
  rs47870427
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77968077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTTTTTA TGATCTTGGG TTCTTCTGGG AGTGACAGGG
  AGAGTGGGTG GCTGGGTGCA GGAAGTCATG TCATGGCAGA CCTGGAAAAG TGTCACTCCC
  K
  GCTCTTCCTG CTATCGATGA CATTACTGTC AGTTATGAAA CAAATCAGGT TTTCACAGCA
  CTCTCTGGCG ATTTGTTAAG TCTTGGGTTC TACCCACCAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63192723	NES17468872	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47870427					SNP	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63192723	NES17468872	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77968077 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	570 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541208	regulatory region 541208	818 bp distal
Rr541209	regulatory region 541209	137 bp distal
Tssr152064	transcription start site region 152064	853 bp downstream
Tssr152065	transcription start site region 152065	836 bp downstream
Tssr152066	transcription start site region 152066	1811 bp upstream
Tssr152067	transcription start site region 152067	1843 bp upstream
Tssr152068	transcription start site region 152068	1873 bp upstream
Tssr152069	transcription start site region 152069	1974 bp upstream