rs47871336 SNP Detail

Summary

• ID
  rs47871336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41184378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGATGG TCAGGGCAAG
  GAGGAAGAGG AGAATGAACT GGCACACTAC ACATCTGTCT GTAGAGAGCT TTGGAGCCAG
  GCCACCAGAG GAATGCTGCC CAAGCATCAT CACCTTCAGA AAGAGCTGCC CTTCTTCTCA
  GGAGGAATGT TGAAGACACT GGCAAATTAC TGAGAGTGAT AATGTTCTCC CAGGCTCAGC
  R
  ATGGTGGGCA CCCTGCTATC ATTCTCTGAC GGGTTTCTCA GACTTGAGGA CAGTTGAACT
  CTTTAAATAT CTGTCTGTCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAT CCATCCATCC ATCCATCCAT CCATCCATCC ATCCATCCAT CCATCCATCT
  ATCTATCTAT CTATCTATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60399175	NES15898930	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47871336					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399175	NES15898930	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41184378 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575921	regulatory region 575921	998 bp distal
Rr575922	regulatory region 575922	1276 bp distal