rs47872584 SNP Detail

Summary

• ID
  rs47872584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGCCCA CGGCGCAGTC
  GGCTACCAGA AGCTGCGAGT GGGGGTAGGT GGGCGGCAAG AAGGGAGGGC CTTTTTTTTT
  AATGTAGTGT GTTGTGTTTG AAGGAGAGAA TTTATTTCCG CTTCCTATGA TTGCAAAAAC
  GTGGGGGCGG GGGGGGGGCG GGAAATCGGT CAGCTTTAGG GCTGTTCTTA ACAGTGTTGG
  R
  TGTTATTCCC ATTTCACAGA TGAGGAATAA TTTCCGGGAG AACTGATCTT CATTCTGATT
  TATTTAGAGG CAGCTGGAGC CCCTACTTTC TGAGAAAACT TTCACCTCTA CCTGGGGAGG
  CTACCTTCCT ATTGTAAAGC AGATACACAA CATTTGAATT CCTCCAAAGG TGGCCCTTCA
  CTCTCAGCTT CTCTCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136852138	ENSMUSSNP674067	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323137466	CHEV_9_99778039	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47872584					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1150 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	896 bp downstream
Rr685463	regulatory region 685463	1892 bp distal
Rr685464	regulatory region 685464	1461 bp distal
Rr685465	regulatory region 685465	960 bp distal
Rr685466	regulatory region 685466	163 bp proximal
Sox14	SRY (sex determining region Y)-box 14	1450 bp upstream
Tssr91083	transcription start site region 91083	1427 bp upstream
Tssr91084	transcription start site region 91084	1408 bp upstream