rs47872846 SNP Detail

Summary

• ID
  rs47872846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19306449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTATGG GTCAAGTCTG
  TCTCCTCTTT ATCCATTGGC AGTCCTTTGT TCCTCTGGGA TACTCCTCCT CCTTCTCCCT
  TGTTCCCTTC CCCATCTCCC TCATTCTCTA TTTCCTGTCT TTGTCTCTAA TTCCCTGTTC
  TCTGTCCTTC TGGGGCAAAT GAATCTCCTT TGTGCTGAGC ACTTGTCCTG GAGGTTCTGG
  R
  CAGGTACTTT TCCTTTCAGT CTTAGCTACA GAGAGAGTTC TACAGCAGCC TGAACTACAT
  AGGGAGAGGT GTGGGGTTTA TAGGGGTGGG AGAGGCTGGA GATGTAGCTC AATCGGTAGA
  GTGCTTGTAC CGAAAGTAGG AAATGGACAT CCTTCACCAG TTTAACATAA ACTGCTGGTA
  GCAGTTCGTA CAGGCCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148479060	ENSMUSSNP3732074	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47872846					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19306449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	459 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	within coordinates
Rr643192	regulatory region 643192	1456 bp distal
Rr643193	regulatory region 643193	12 bp proximal
Rr643194	regulatory region 643194	434 bp proximal
Rr643195	regulatory region 643195	1113 bp proximal
Tssr70933	transcription start site region 70933	833 bp downstream
Tssr70934	transcription start site region 70934	848 bp downstream
Tssr70935	transcription start site region 70935	855 bp downstream
Tssr70936	transcription start site region 70936	1269 bp downstream