rs47873292 SNP Detail

Summary

• ID
  rs47873292
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181943900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACACAT GTTTGGCATG
  CCAGCTGCAC TTGGGACACT CGGGACTATT GTGATGCCCA TTAGAGGAGG AATTCATTTA
  AGGACCCACA CCTGTTCTTA GTTCAGAACA GCTGCTGCCC TGTGTGTAGA AGCCAAACCA
  AGGAAAACAG AGGGGGACAA AAGTTCAAGC AGGAGAAGCG CGCTCAGAAA TAGTCATTCC
  W
  TTCAAAACAC TATTGGAGGG TTTTTTTCTC TTCCTTTTGC AGTGAAACTC AGGATCTCAC
  GCATAGTGGC CAGGTGCCCT GCCAACAACA CTTTACAGAG CAGAGTCCCT TCCTTTTCTC
  GCTTACCAGC TACTGTCCCC ATTAGTTACT GTCCCCGTTG CTGAGATAAA ATAGCGTGAC
  AAAAGCCACT TAAGGAAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146402290	ENSMUSSNP4658650	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47873292					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181943900 () rs orientation: forward

Symbol	Name	Function Class
Gm33725	predicted gene, 33725	within coordinates
Rr424861	regulatory region 424861	1794 bp distal
Rr424862	regulatory region 424862	543 bp distal
Rr424863	regulatory region 424863	905 bp distal
Rr424864	regulatory region 424864	42 bp distal
Rr424865	regulatory region 424865	427 bp distal