rs47873346 SNP Detail

Summary

• ID
  rs47873346
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165952587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT AGACTGCCTG GAGGAGTACA
  M
  CATGGCCAAT GCTGCTATGT ATCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146013128	ENSMUSSNP464685	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47873346					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165952587 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	570 bp upstream
Rr372394	regulatory region 372394	within coordinates
Rr422532	regulatory region 422532	1770 bp distal
Rr422533	regulatory region 422533	80 bp proximal
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9857	transcription start site region 9857	536 bp upstream
Tssr9858	transcription start site region 9858	1971 bp upstream
Tssr14809	transcription start site region 14809	1830 bp downstream