rs47873552 SNP Detail

Summary

• ID
  rs47873552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107354554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCTTGG AGGAACAGCT
  GCCCTGCTCT CTGCCTAATC ATATCAGCAC TGGCATGTGT TCTACTTTTT CAAAGCGTGG
  CAGAGCCACC ACCCATTTGG GTTTCATCAG AGTAGGGTAG GATATTGATA TGTCATTCCC
  ATTAATAGGT TCTGCCCAGA GGGGAAGGAA CTGGCTTCTG GGAACAAAGC AAGGCGGGCA
  R
  GAAGGGACTA GAAACCAGTC TTTCTAACAT ACAGCCTCCA AGTACTGTCC GCATATCCTA
  CACTGGAAGG ATAATTCACT CCACAAACAC TGGTGTTCAC CAAGATCTTT AAACCGTGGG
  ACTTAAGTTG GTCTTAATAT TTTGCCCTCC CAGAAGCTCA TCTTACACAC AGTGAAGCTT
  GCACGATATA GCACAGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135584107	ENSMUSSNP5539123	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47873552					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107354554 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	42 bp distal