rs47873558 SNP Detail

Summary

• ID
  rs47873558
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30171108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC AGTATTCTAA AATCTTTTTC
  T
  CCCCCCCATT TCAATGGAAC AGAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133095144	ENSMUSSNP6446570	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321776211	CHEV_6_30121109	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47873558					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30171108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	1807 bp proximal
Mir96	microRNA 96	1558 bp upstream
Mir183	microRNA 183	1372 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1372 bp distal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1372 bp distal
Rncr4	retina expressed non-coding RNA 4	1784 bp upstream
Rr146072	regulatory region 146072	707 bp distal
Rr146073	regulatory region 146073	292 bp proximal
Rr146074	regulatory region 146074	1092 bp proximal
Tssr55327	transcription start site region 55327	1751 bp upstream