rs47875816 SNP Detail

Summary

• ID
  rs47875816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTACCGAG AAGCAGGCAG
  CAAGGCACTC CGCTGGGTCT GCTGCTGGCA GCAGTGTGGC TGAGGAAGTA AAACTGCCTG
  GGTCCACCCA TAGGCCTGCC TCCTGAACAG GGCCCGCCCT GCTGTTAGCC TGCCAGGCCT
  GGCCCTCGTG CTGACGCTCC TCCCTCCCTC CCCAAGCACC CCAAAGGCCT TCCTAGATCC
  R
  TATCTGTGAT CCTGCTGGCT GGTAAAATGG ACTACTGCCC CAACACTGAC AACTCAAACT
  GGGTTGTCTC TAGGATTCAA ATGTGCCCGT GAGCCTCTGC CTTTTCTTGT CTTTCCCCCA
  GTCCTTGATC CAGGCCTTCC TAAAAAGGGC TGCCTCCTTG GCCACAAACG TACCCCTGCC
  CCCACCACGG CCCCCGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss61451635	NES16833317	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs47875816					SNP	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451635	NES16833317	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888451 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	364 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	236 bp upstream
Rr686956	regulatory region 686956	1518 bp distal
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	279 bp proximal
Rr686959	regulatory region 686959	425 bp proximal
Shisa5	shisa family member 5	1606 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr91571	transcription start site region 91571	1660 bp upstream
Tssr91572	transcription start site region 91572	1112 bp upstream
Tssr91573	transcription start site region 91573	978 bp upstream
Tssr91574	transcription start site region 91574	745 bp upstream
Tssr91575	transcription start site region 91575	698 bp upstream
Tssr91576	transcription start site region 91576	612 bp upstream
Tssr91577	transcription start site region 91577	124 bp upstream
Tssr91578	transcription start site region 91578	293 bp downstream
Tssr91579	transcription start site region 91579	328 bp downstream