rs47877393 SNP Detail

Summary

• ID
  rs47877393
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40083915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT TCTGGTAAAG AATCAATCAT
  C
  TACAGGGATG GGCTTCCTGA CGTGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144620785	ENSMUSSNP7187416	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322624647	CHEV_8_40716228	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47877393					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40083915 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	1617 bp upstream
Tssr81027	transcription start site region 81027	1519 bp upstream
Tssr81028	transcription start site region 81028	1465 bp upstream
Tssr81029	transcription start site region 81029	1341 bp upstream
Tssr81030	transcription start site region 81030	1224 bp upstream
Tssr81031	transcription start site region 81031	528 bp upstream
Tssr81032	transcription start site region 81032	323 bp downstream
Tssr81033	transcription start site region 81033	433 bp downstream
Tssr81034	transcription start site region 81034	458 bp downstream